Ruby :: Kappa :: Installation

Information regarding Kappa
http://psilambda.com/

Installation on Ubuntu 10.10
- Download Jockey from https://launchpad.net/jockey
- To build it you need python-distutils-extra at https://launchpad.net/python-distutils-extra
$ cd  python-distutils-extra-2.22
$ ./setup.py build
$ sudo ./setup.py install


In Jockey the ../setup.py is giving errors
$ sudo apt-get install python-encutils

Tryptophan biosynthesis pathway

Enzymes present in Tryptophan biosynthesis pathway.

1. Anthranilate synthase
2. Anthranilate PR-transferase
3. PR-anthranilate isomerase
4. Indole-3-glyserol phosphate synthase
5. Trp synthase
6. Tryptophan aminotransferase

Tryptophan synthase beta chain
Tryptophan synthase alpha chain
Tryptophanase
COG0134 Indole-3-glycerol phosphate synthase
COG0133 Tryptophan synthase beta chain
COG0159 Tryptophan synthase alpha chain
COG3033 Tryptophanase

Library check

TO check for libraries needed for the package

$ ldd rmblastn 
    linux-vdso.so.1 =>  (0x00007fff5b9e4000)
    libz.so.1 => /lib/libz.so.1 (0x00007f7e7c416000)
    libdl.so.2 => /lib/libdl.so.2 (0x00007f7e7c212000)
    libpcre.so.0 => not found
    libnsl.so.1 => /lib/libnsl.so.1 (0x00007f7e7bff7000)
    libpthread.so.0 => /lib/libpthread.so.0 (0x00007f7e7bdda000)
    libstdc++.so.6 => /usr/lib/libstdc++.so.6 (0x00007f7e7bac5000)
    libm.so.6 => /lib/libm.so.6 (0x00007f7e7b842000)
    libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x00007f7e7b62b000)
    libc.so.6 => /lib/libc.so.6 (0x00007f7e7b2a7000)
    /lib64/ld-linux-x86-64.so.2 (0x00007f7e7c63c000)

This tells you that libpcre.so.0 library is missing.