R :: Install :: ClassComparison :: ClassDiscovery

Install R

$ sudo apt-get install r-base

$ sudo apt-get install r-base-dev r-base-core

Go to R

$ sudo R

> install.packages(repos="http://bioinformatics.mdanderson.org/OOMPA", dependencies=TRUE)

- ran into warnings and errors

- Error : package 'Biobase' could not be loaded

- Information to install biobase, http://www.bioconductor.org/packages/2.2/bioc/html/Biobase.html

> source("http://bioconductor.org/biocLite.R")
> biocLite("Biobase")
> install.packages(repos="http://bioinformatics.mdanderson.org/OOMPA", dependencies=TRUE)

- select ClassComparison

- you should get the following sentence

* DONE (ClassComparison)

check if the package is installed
> library('ClassComparison')

> install.packages(repos="http://bioinformatics.mdanderson.org/OOMPA", dependencies=TRUE)
- select ClassDiscovery

- Error : package 'mclust' could not be loaded

To install mclust

> install.packages("Rserve")

* Done (Rserve)

On unix:
$ wget http://bioconductor.org/packages/1.9/bioc/src/contrib/vsn_1.12.0.tar.gz

$ sudo R CMD INSTALL vsn_1.12.0.tar.gz

* Done (vsn)

Go to R

$ sudo R

> install.packages('mclust')

* Done (mclust)

> install.packages(repos="http://bioinformatics.mdanderson.org/OOMPA", dependencies=TRUE)

 * DONE (ClassDiscovery)

check installation
> library('ClassDiscovery')